Test version with Brian's latest code (revised distance calculations) /shared/anaconda2/bin/python2.7 /lustre/bbue/ch4/compute_ime_061518/compute_ime.py /lustre/athorpe/ch4/gen_ime_geotif/input/FA16_Plumes_20180527_GasStorage.xlsx "Plume_List" -o /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/FA16_Gas_Storage_1000ppmm_150fetch_5_10_20merge_ime_061518 --calids v1n2 v2m4 -p 1000 -m 10 -f 150 /shared/anaconda2/bin/python2.7 /lustre/bbue/ch4/compute_ime_061518/compute_ime.py /lustre/athorpe/ch4/gen_ime_geotif/input/SP17_FA17_Plumes_20180527_GasStorage.xlsx "Plume_List" -o /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/SP17_FA17_Gas_Storage_1000ppmm_150fetch_5_10_20merge_ime_061518 --calids v2p4 v2p7 v2p9 v2p10 -p 1000 -m 5 10 20 -f 150 Test version with concentric circles /shared/anaconda2/bin/python2.7 /lustre/bbue/ch4/compute_ime_061518/compute_ime.py /lustre/athorpe/ch4/gen_ime_geotif/input/SP17_FA17_Plumes_20180527_GasStorage.xlsx "Plume_List" -o /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/SP17_FA17_Gas_Storage_1000ppmm_150fetch_5_10_20merge --calids v2p4 v2p7 v2p9 v2p10 -p 1000 -m 5 10 20 -f 150 /shared/anaconda2/bin/python2.7 /lustre/bbue/ch4/compute_ime_061518/compute_ime.py /lustre/athorpe/ch4/gen_ime_geotif/input/FA16_Plumes_20180527_GasStorage.xlsx "Plume_List" -o /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/FA16_Gas_Storage_1000ppmm_150fetch_5_10_20merge --calids v1n2 v2m4 -p 1000 -m 5 10 20 -f 150 Generate IME: cat /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/SP17_FA17_Gas_Storage_1000ppmm_150fetch_5_10_20merge/ang2017*/*_ime.txt|sort|uniq >> /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/SP17_FA17_Gas_Storage_1000ppmm_150fetch_5_10_20merge/imevals_SP17_FA17_Gas_Storage_1000ppmm_150fetch_20180604.txt cat /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/FA16_Gas_Storage_1000ppmm_150fetch_5_10_20merge/ang2016*/*_ime.txt|sort|uniq >> 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/lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/SP17_FA17_Gas_Storage_1000ppm_75fetch_5_10_20merge/ang2017*/mergedist20/*.tif /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/SP17_FA17_Gas_Storage_1000ppm_75fetch_5_10_20merge/TIF_PDF_JSON/mergedist20 cp /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/SP17_FA17_Gas_Storage_1000ppm_75fetch_5_10_20merge/ang2017*/mergedist50/*.tif /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/SP17_FA17_Gas_Storage_1000ppm_75fetch_5_10_20merge/TIF_PDF_JSON/mergedist50 cp /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/SP17_FA17_Gas_Storage_1000ppm_75fetch_5_10_20merge/ang2017*/mergedist10/*.pdf /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/SP17_FA17_Gas_Storage_1000ppm_75fetch_5_10_20merge/TIF_PDF_JSON/mergedist10 cp /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/SP17_FA17_Gas_Storage_1000ppm_75fetch_5_10_20merge/ang2017*/mergedist20/*.pdf /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/SP17_FA17_Gas_Storage_1000ppm_75fetch_5_10_20merge/TIF_PDF_JSON/mergedist20 cp /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/SP17_FA17_Gas_Storage_1000ppm_75fetch_5_10_20merge/ang2017*/mergedist50/*.pdf /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/SP17_FA17_Gas_Storage_1000ppm_75fetch_5_10_20merge/TIF_PDF_JSON/mergedist50 cp /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/SP17_FA17_Gas_Storage_1000ppm_75fetch_5_10_20merge/ang2017*/mergedist10/*.geojson /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/SP17_FA17_Gas_Storage_1000ppm_75fetch_5_10_20merge/TIF_PDF_JSON/mergedist10 cp /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/SP17_FA17_Gas_Storage_1000ppm_75fetch_5_10_20merge/ang2017*/mergedist20/*.geojson /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/SP17_FA17_Gas_Storage_1000ppm_75fetch_5_10_20merge/TIF_PDF_JSON/mergedist20 cp /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/SP17_FA17_Gas_Storage_1000ppm_75fetch_5_10_20merge/ang2017*/mergedist50/*.geojson /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/SP17_FA17_Gas_Storage_1000ppm_75fetch_5_10_20merge/TIF_PDF_JSON/mergedist50 Test controlled release with concentric circle IMEs: /shared/anaconda2/bin/python2.7 /lustre/athorpe/ch4/compute_ime_040318_akt/compute_ime.py /lustre/athorpe/ch4/gen_ime_geotif/input/FA17_Test_Controlled_Release_20180415.xlsx "FA17 Control Release" -o /lustre/athorpe/ch4/gen_ime_geotif/output/Control_Release_1000ppmm_150fetch_5_10_20merge --calids v2p4 v2p7 v2p9 v2p10 -p 1000 -m 5 10 20 -f 150 Aggregate results for GeoJSON cp /lustre/athorpe/ch4/gen_ime_geotif/output/Control_Release_1000ppmm_150fetch_5_10_20merge/ang2017*/mergedist5/*.geojson /lustre/athorpe/ch4/gen_ime_geotif/output/Control_Release_1000ppmm_150fetch_5_10_20merge/GeoJSON/mergedist5 cp /lustre/athorpe/ch4/gen_ime_geotif/output/Control_Release_1000ppmm_150fetch_5_10_20merge/ang2017*/mergedist10/*.geojson /lustre/athorpe/ch4/gen_ime_geotif/output/Control_Release_1000ppmm_150fetch_5_10_20merge/GeoJSON/mergedist10 cp /lustre/athorpe/ch4/gen_ime_geotif/output/Control_Release_1000ppmm_150fetch_5_10_20merge/ang2017*/mergedist20/*.geojson /lustre/athorpe/ch4/gen_ime_geotif/output/Control_Release_1000ppmm_150fetch_5_10_20merge/GeoJSON/mergedist20 Aggregate results for pdfs cp /lustre/athorpe/ch4/gen_ime_geotif/output/Control_Release_1000ppmm_150fetch_5_10_20merge/ang2017*/mergedist5/*.pdf /lustre/athorpe/ch4/gen_ime_geotif/output/Control_Release_1000ppmm_150fetch_5_10_20merge/PDF/mergedist5 cp /lustre/athorpe/ch4/gen_ime_geotif/output/Control_Release_1000ppmm_150fetch_5_10_20merge/ang2017*/mergedist10/*.pdf /lustre/athorpe/ch4/gen_ime_geotif/output/Control_Release_1000ppmm_150fetch_5_10_20merge/PDF/mergedist10 cp /lustre/athorpe/ch4/gen_ime_geotif/output/Control_Release_1000ppmm_150fetch_5_10_20merge/ang2017*/mergedist20/*.pdf /lustre/athorpe/ch4/gen_ime_geotif/output/Control_Release_1000ppmm_150fetch_5_10_20merge/PDF/mergedist20 Test controlled release with concentric circle IMEs for gas storage paper: /shared/anaconda2/bin/python2.7 /lustre/athorpe/ch4/compute_ime_040318_akt/compute_ime.py /lustre/athorpe/ch4/gen_ime_geotif/input/FA16_Master_Source_List_IME_GasStorage.xlsx "FA16 plumes IME" -o /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/FA16_Gas_Storage_1000ppm_150fetch_5_10_20merge --calids v1n2 v2m4 -p 1000 -m 5 10 20 -f 150 Aggregate results for GeoJSON cp /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/FA16_Gas_Storage_1000ppm_150fetch_5_10_20merge/ang2016*/mergedist5/*.geojson /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/FA16_Gas_Storage_1000ppm_150fetch_5_10_20merge/GeoJSON/mergedist5 cp /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/FA16_Gas_Storage_1000ppm_150fetch_5_10_20merge/ang2016*/mergedist10/*.geojson /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/FA16_Gas_Storage_1000ppm_150fetch_5_10_20merge/GeoJSON/mergedist10 cp /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/FA16_Gas_Storage_1000ppm_150fetch_5_10_20merge/ang2016*/mergedist20/*.geojson /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/FA16_Gas_Storage_1000ppm_150fetch_5_10_20merge/GeoJSON/mergedist20 Aggregate results for pdfs cp /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/FA16_Gas_Storage_1000ppm_150fetch_5_10_20merge/ang2016*/mergedist5/*.pdf /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/FA16_Gas_Storage_1000ppm_150fetch_5_10_20merge/PDF/mergedist5 cp /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/FA16_Gas_Storage_1000ppm_150fetch_5_10_20merge/ang2016*/mergedist10/*.pdf /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/FA16_Gas_Storage_1000ppm_150fetch_5_10_20merge/PDF/mergedist10 cp /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/FA16_Gas_Storage_1000ppm_150fetch_5_10_20merge/ang2016*/mergedist20/*.pdf /lustre/athorpe/ch4/gen_ime_geotif/output/Gas_Storage/FA16_Gas_Storage_1000ppm_150fetch_5_10_20merge/PDF/mergedist20 /shared/anaconda2/bin/python2.7 /lustre/bbue/ch4/compute_ime_030118/compute_ime.py /lustre/athorpe/ch4/gen_ime_geotif/input/FA17_Test_Controlled_Release_20180415.xlsx "FA17 Control Release" -o /lustre/athorpe/ch4/gen_ime_geotif/output/Control_Release_1000ppmm_150fetch_5_10_20merge --calids v2p4 v2p7 v2p9 v2p10 -p 1000 -m 5 10 20 -f 150 FA17: 1500 ppmm /shared/anaconda2/bin/python2.7 /lustre/bbue/ch4/compute_ime_030118/compute_ime.py /lustre/athorpe/ch4/gen_ime_geotif/input/FA17_Master_Source_List_20180224.xlsx "FA17_Plumes_20180223_sort4" -o /lustre/athorpe/ch4/gen_ime_geotif/output/FA17_1500ppmm_150fetch_5_10_20merge --calids v2p4 v2p7 v2p9 v2p10 -p 1500 -m 5 10 20 -f 150 --randomize Error ( ang20170902t205016 ) /shared/anaconda2/bin/python2.7 /lustre/bbue/ch4/compute_ime_020318/compute_ime.py /lustre/athorpe/ch4/gen_ime_geotif/input/FA17_Master_Source_List_20180224.xlsx "FA17_Plumes_20180223_sort4" -o /lustre/athorpe/ch4/gen_ime_geotif/output/FA17_1000ppmm_150fetch_5_10_20merge --calids v2p4 v2p7 v2p9 v2p10 -p 1000 -m 5 10 20 -f 150 Running /shared/anaconda2/bin/python2.7 /lustre/bbue/ch4/compute_ime_020318/compute_ime.py /lustre/athorpe/ch4/gen_ime_geotif/input/FA17_Master_Source_List_20180224.xlsx "FA17_Plumes_20180223_sort4" -o /lustre/athorpe/ch4/gen_ime_geotif/output/FA17_1000ppmm_150fetch_5_10_20merge --calids v2p4 v2p7 v2p9 v2p10 -p 1000 -m 5 10 20 -f 150 --randomize Error ( ang20170902t205016 ) /shared/anaconda2/bin/python2.7 /lustre/bbue/ch4/compute_ime_020318/compute_ime.py /lustre/athorpe/ch4/gen_ime_geotif/input/FA17_Master_Source_List_20180224.xlsx "FA17_Plumes_20180223_sort4" -o /lustre/athorpe/ch4/gen_ime_geotif/output/FA17_500ppmm_150fetch_5_10_20merge --calids v2p4 v2p7 v2p9 v2p10 -p 500 -m 5 10 20 -f 150 --randomize /shared/anaconda2/bin/python2.7 /lustre/bbue/ch4/compute_ime_new/compute_ime.py /lustre/athorpe/ch4/gen_ime_geotif/input/FA17_Master_Source_List_IME_Partial_20171114.xlsx "FA17_Plumes_Partial" -o /lustre/athorpe/ch4/gen_ime_geotif/output/FA17_Master_Source_List_IME_Partial_20171114 --calids v2p4 v2p7 v2p9 v2p10 -p 500 -f 500 -m 5 10 20 50 /shared/anaconda2/bin/python2.7 /lustre/bbue/ch4/compute_ime_new/compute_ime.py /lustre/athorpe/ch4/gen_ime_geotif/input/FA17_Master_Source_List_Gas_Storage_IME_Partial_20171206.xlsx "FA17_Plumes_Partial" -o /lustre/athorpe/ch4/gen_ime_geotif/output/FA17_Gas_Storage_Partial_1000ppmm_250fetch_5merge --calids v2p4 v2p7 v2p9 v2p10 -p 1000 -f 250 -m 5 10 20 /shared/anaconda2/bin/python2.7 /lustre/bbue/ch4/compute_ime_new/compute_ime.py /lustre/athorpe/ch4/gen_ime_geotif/input/FA17_Master_Source_List_IME_Partial_Mac_Island_Oct6_2017.xlsx "FA17_Plumes_Partial" -o /lustre/athorpe/ch4/gen_ime_geotif/output/FA17_Gas_Storage_Partial_Mac_Island_Oct6_2017_For_Fig --calids v2p4 v2p7 v2p9 v2p10 -p 500 -f 500 -m 20 SP17: 1500 ppmm /shared/anaconda2/bin/python2.7 /lustre/bbue/ch4/compute_ime_030118/compute_ime.py /lustre/athorpe/ch4/gen_ime_geotif/input/SP17_Master_Source_List_IME_Partial_20180226.xlsx "SP17_Plumes_Partial" -o /lustre/athorpe/ch4/gen_ime_geotif/output/SP17_1500ppmm_150fetch_5_10_20merge --calids v2p4 v2p7 v2p9 v2p10 -p 1500 -m 5 10 20 -f 150 --randomize Done /shared/anaconda2/bin/python2.7 /lustre/bbue/ch4/compute_ime_020318/compute_ime.py /lustre/athorpe/ch4/gen_ime_geotif/input/SP17_Master_Source_List_IME_Partial_20180226.xlsx "SP17_Plumes_Partial" -o /lustre/athorpe/ch4/gen_ime_geotif/output/SP17_1000ppmm_150fetch_5_10_20merge --calids v2p4 v2p7 v2p9 v2p10 -p 1000 -m 5 10 20 -f 150 Done /shared/anaconda2/bin/python2.7 /lustre/bbue/ch4/compute_ime_020318/compute_ime.py /lustre/athorpe/ch4/gen_ime_geotif/input/SP17_Master_Source_List_IME_Partial_20180226.xlsx "SP17_Plumes_Partial" -o /lustre/athorpe/ch4/gen_ime_geotif/output/SP17_500ppmm_150fetch_5_10_20merge --calids v2p4 v2p7 v2p9 v2p10 -p 500 -m 5 10 20 -f 150 /shared/anaconda2/bin/python2.7 /lustre/bbue/ch4/compute_ime_020318/compute_ime.py /lustre/athorpe/ch4/gen_ime_geotif/input/SP17_Master_Source_List_IME_Partial_20171114.xlsx "SP17_Plumes_Partial" -o /lustre/athorpe/ch4/gen_ime_geotif/output/SP17_Gas_Storage_500_1000ppmm_50_150fetch_5_10_20merge --calids v2p4 v2p7 v2p9 v2p10 -p 500 1000 -m 5 10 20 -f 50 150 /shared/anaconda2/bin/python2.7 /lustre/bbue/ch4/compute_ime_new/compute_ime.py /lustre/athorpe/ch4/gen_ime_geotif/input/SP17_Master_Source_List_IME_Partial_20171114.xlsx "SP17_Plumes_Partial" -o /lustre/athorpe/ch4/gen_ime_geotif/output/SP17_Master_Source_List_IME_Partial_20171114 --calids v2p4 v2p7 v2p9 v2p10 -p 500 -m 5 10 20 50 -f 500 /shared/anaconda2/bin/python2.7 /lustre/bbue/ch4/compute_ime_new/compute_ime.py /lustre/athorpe/ch4/gen_ime_geotif/input/SP17_Master_Source_List_IME_Partial_20171114b.xlsx "SP17_Sort1" -o /lustre/bbue/ch4/ime_gtif_v7_3 --calids v2p4 v2p7 v2p9 v2p10 -p 500 -m 5 10 20 50 -f 500 /shared/anaconda2/bin/python2.7 /lustre/bbue/ch4/compute_ime_new/compute_ime.py /lustre/athorpe/ch4/gen_ime_geotif/input/SP17_Master_Source_List_IME_Partial_Misc_Sunshine_20171128.xlsx "SP17_Sort1" -o /lustre/athorpe/ch4/gen_ime_geotif/output/SP17_Partial_Sunshine --calids v2p4 v2p7 v2p9 v2p10 -p 500 -m 5 10 20 50 -f 500 FA16: 1500 ppmm /shared/anaconda2/bin/python2.7 /lustre/bbue/ch4/compute_ime_030118/compute_ime.py /lustre/athorpe/ch4/gen_ime_geotif/input/FA16_Master_Source_List_IME_20180226.xlsx "FA17_Plumes_Partial" -o /lustre/athorpe/ch4/gen_ime_geotif/output/FA16_1500ppmm_150fetch_5_10_20merge --calids v1n2 v2m4 -p 1500 -m 5 10 20 -f 150 --randomize Done /shared/anaconda2/bin/python2.7 /lustre/bbue/ch4/compute_ime_020318/compute_ime.py /lustre/athorpe/ch4/gen_ime_geotif/input/FA16_Master_Source_List_IME_20180226.xlsx "FA17_Plumes_Partial" -o /lustre/athorpe/ch4/gen_ime_geotif/output/FA16_1000ppmm_150fetch_5_10_20merge --calids v1n2 v2m4 -p 1000 -m 5 10 20 -f 150 Error ( ang20160916t212645 ) /shared/anaconda2/bin/python2.7 /lustre/bbue/ch4/compute_ime_020318/compute_ime.py /lustre/athorpe/ch4/gen_ime_geotif/input/FA16_Master_Source_List_IME_20180226.xlsx "FA17_Plumes_Partial" -o /lustre/athorpe/ch4/gen_ime_geotif/output/FA16_500ppmm_150fetch_5_10_20merge --calids v1n2 v2m4 -p 500 -m 5 10 20 -f 150 Running /shared/anaconda2/bin/python2.7 /lustre/bbue/ch4/compute_ime_020318/compute_ime.py /lustre/athorpe/ch4/gen_ime_geotif/input/FA16_Master_Source_List_IME_20180226.xlsx "Fall 2016 plumes for report" -o /lustre/athorpe/ch4/gen_ime_geotif/output/FA16_500ppmm_150fetch_5_10_20merge --calids v1n2 v2m4 -p 500 -m 5 10 20 -f 150 --randomize /shared/anaconda2/bin/python2.7 /lustre/bbue/ch4/compute_ime_new/compute_ime.py /lustre/athorpe/ch4/gen_ime_geotif/input/FA16_Master_Source_List_IME_Partial_20171114.xlsx "FA16_Plumes_Partial" -o /lustre/athorpe/ch4/gen_ime_geotif/output/FA16_Master_Source_List_IME_Partial_20171114 --calids v1n2 v2m4 -p 500 -m 5 10 20 50 -f 500 Versions of results: 2016 v1n2 v2m4 2017 v2p4 v2p7 v2p9 v2p10 Generate IME: SP17 1500 ppmm cat /lustre/athorpe/ch4/gen_ime_geotif/output/SP17_1500ppmm_150fetch_5_10_20merge/ang2017*/*_ime.txt|sort|uniq >> /lustre/athorpe/ch4/gen_ime_geotif/output/SP17_1500ppmm_150fetch_5_10_20merge/imevals_SP17_1500ppmm_20180227.txt SP17 1000 ppmm cat /lustre/athorpe/ch4/gen_ime_geotif/output/SP17_1000ppmm_150fetch_5_10_20merge/ang2017*/*_ime.txt|sort|uniq >> /lustre/athorpe/ch4/gen_ime_geotif/output/SP17_1000ppmm_150fetch_5_10_20merge/imevals_SP17_1000ppmm_20180227.txt SP17 500 ppmm cat /lustre/athorpe/ch4/gen_ime_geotif/output/SP17_500ppmm_150fetch_5_10_20merge/ang2017*/*_ime.txt|sort|uniq >> /lustre/athorpe/ch4/gen_ime_geotif/output/SP17_500ppmm_150fetch_5_10_20merge/imevals_SP17_500ppmm_20180227.txt FA16 1500 ppmm cat /lustre/athorpe/ch4/gen_ime_geotif/output/FA16_1500ppmm_150fetch_5_10_20merge/ang2016*/*_ime.txt|sort|uniq >> /lustre/athorpe/ch4/gen_ime_geotif/output/FA16_1500ppmm_150fetch_5_10_20merge/imevals_FA16_1500ppmm_20180227.txt FA16 1000 ppmm cat /lustre/athorpe/ch4/gen_ime_geotif/output/FA16_1000ppmm_150fetch_5_10_20merge/ang2016*/*_ime.txt|sort|uniq >> /lustre/athorpe/ch4/gen_ime_geotif/output/FA16_1000ppmm_150fetch_5_10_20merge/imevals_FA16_1000ppmm_20180227.txt FA16 500 ppmm cat /lustre/athorpe/ch4/gen_ime_geotif/output/FA16_500ppmm_150fetch_5_10_20merge/ang2016*/*_ime.txt|sort|uniq >> /lustre/athorpe/ch4/gen_ime_geotif/output/FA16_500ppmm_150fetch_5_10_20merge/imevals_FA16_500ppmm_20180227.txt FA17 1500 ppmm cat /lustre/athorpe/ch4/gen_ime_geotif/output/FA17_1500ppmm_150fetch_5_10_20merge/ang2017*/*_ime.txt|sort|uniq >> /lustre/athorpe/ch4/gen_ime_geotif/output/FA17_1500ppmm_150fetch_5_10_20merge/imevals_FA17_1500ppmm_20180227.txt FA17 1000 ppmm cat /lustre/athorpe/ch4/gen_ime_geotif/output/FA17_1000ppmm_150fetch_5_10_20merge/ang2017*/*_ime.txt|sort|uniq >> /lustre/athorpe/ch4/gen_ime_geotif/output/FA17_1000ppmm_150fetch_5_10_20merge/imevals_FA17_1000ppmm_20180227.txt FA17 500 ppmm cat /lustre/athorpe/ch4/gen_ime_geotif/output/FA17_500ppmm_150fetch_5_10_20merge/ang2017*/*_ime.txt|sort|uniq >> /lustre/athorpe/ch4/gen_ime_geotif/output/FA17_500ppmm_150fetch_5_10_20merge/imevals_FA17_500ppmm_20180227.txt Fall 2017 cat /lustre/bbue/ch4/ime_gtif_v7_2/ang2017*/*_ime.txt|sort|uniq >> /lustre/bbue/ch4/ime_gtif_v7_2/imevals_FA17_500ppmm_20171117.txt cat /lustre/bbue/ch4/ime_gtif_v7_2/ang2017*/*_ime.txt|sort|uniq >> /lustre/bbue/ch4/ime_gtif_v7_2/imevals_FA17_500ppmm_20171117.txt cat /lustre/athorpe/ch4/gen_ime_geotif/output/FA17_Gas_Storage_Partial_1000ppmm_250fetch_5merge/ang2017*/*_ime.txt|sort|uniq >> /lustre/athorpe/ch4/gen_ime_geotif/output/FA17_Gas_Storage_Partial_1000ppmm_250fetch_5merge/imevals_FA17_Gas_Storage_Partial_1000ppmm_250fetch_20171206.txt Spring 2017 /lustre/athorpe/ch4/gen_ime_geotif/output/SP17_Gas_Storage_1000ppmm_50_150fetch_5_10_20merge/ang2017*/*_ime.txt|sort|uniq >> /lustre/bbue/ch4/ime_gtif_v7_2/imevals_SP17_1000ppmm_20180227.txt Copy TIF and PDF from one merge category SP17 1500 ppmm cp /lustre/athorpe/ch4/gen_ime_geotif/output/SP17_1500ppmm_150fetch_5_10_20merge/ang2017*/mergedist5/*.tif /lustre/athorpe/ch4/gen_ime_geotif/output/SP17_1500ppmm_150fetch_5_10_20merge/TIF_PDF/mergedist5 cp /lustre/athorpe/ch4/gen_ime_geotif/output/SP17_1500ppmm_150fetch_5_10_20merge/ang2017*/mergedist5/*.pdf /lustre/athorpe/ch4/gen_ime_geotif/output/SP17_1500ppmm_150fetch_5_10_20merge/TIF_PDF/mergedist5 cp /lustre/athorpe/ch4/gen_ime_geotif/output/SP17_1500ppmm_150fetch_5_10_20merge/ang2017*/mergedist10/*.tif /lustre/athorpe/ch4/gen_ime_geotif/output/SP17_1500ppmm_150fetch_5_10_20merge/TIF_PDF/mergedist10 cp /lustre/athorpe/ch4/gen_ime_geotif/output/SP17_1500ppmm_150fetch_5_10_20merge/ang2017*/mergedist10/*.pdf /lustre/athorpe/ch4/gen_ime_geotif/output/SP17_1500ppmm_150fetch_5_10_20merge/TIF_PDF/mergedist10 cp /lustre/athorpe/ch4/gen_ime_geotif/output/SP17_1500ppmm_150fetch_5_10_20merge/ang2017*/mergedist20/*.tif /lustre/athorpe/ch4/gen_ime_geotif/output/SP17_1500ppmm_150fetch_5_10_20merge/TIF_PDF/mergedist20 cp /lustre/athorpe/ch4/gen_ime_geotif/output/SP17_1500ppmm_150fetch_5_10_20merge/ang2017*/mergedist20/*.pdf /lustre/athorpe/ch4/gen_ime_geotif/output/SP17_1500ppmm_150fetch_5_10_20merge/TIF_PDF/mergedist20 SP17 1000 ppmm cp /lustre/athorpe/ch4/gen_ime_geotif/output/SP17_1000ppmm_150fetch_5_10_20merge/ang2017*/mergedist5/*.tif 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/lustre/athorpe/ch4/gen_ime_geotif/output/FA17_1000ppmm_150fetch_5_10_20merge/ang2017*/mergedist20/*.pdf /lustre/athorpe/ch4/gen_ime_geotif/output/FA17_1000ppmm_150fetch_5_10_20merge/TIF_PDF/mergedist20 FA17 500 ppmm cp /lustre/athorpe/ch4/gen_ime_geotif/output/FA17_500ppmm_150fetch_5_10_20merge/ang2017*/mergedist5/*.tif /lustre/athorpe/ch4/gen_ime_geotif/output/FA17_500ppmm_150fetch_5_10_20merge/TIF_PDF/mergedist5 cp /lustre/athorpe/ch4/gen_ime_geotif/output/FA17_500ppmm_150fetch_5_10_20merge/ang2017*/mergedist5/*.pdf /lustre/athorpe/ch4/gen_ime_geotif/output/FA17_500ppmm_150fetch_5_10_20merge/TIF_PDF/mergedist5 cp /lustre/athorpe/ch4/gen_ime_geotif/output/FA17_500ppmm_150fetch_5_10_20merge/ang2017*/mergedist10/*.tif /lustre/athorpe/ch4/gen_ime_geotif/output/FA17_500ppmm_150fetch_5_10_20merge/TIF_PDF/mergedist10 cp /lustre/athorpe/ch4/gen_ime_geotif/output/FA17_500ppmm_150fetch_5_10_20merge/ang2017*/mergedist10/*.pdf /lustre/athorpe/ch4/gen_ime_geotif/output/FA17_500ppmm_150fetch_5_10_20merge/TIF_PDF/mergedist10 cp /lustre/athorpe/ch4/gen_ime_geotif/output/FA17_500ppmm_150fetch_5_10_20merge/ang2017*/mergedist20/*.tif /lustre/athorpe/ch4/gen_ime_geotif/output/FA17_500ppmm_150fetch_5_10_20merge/TIF_PDF/mergedist20 cp /lustre/athorpe/ch4/gen_ime_geotif/output/FA17_500ppmm_150fetch_5_10_20merge/ang2017*/mergedist20/*.pdf /lustre/athorpe/ch4/gen_ime_geotif/output/FA17_500ppmm_150fetch_5_10_20merge/TIF_PDF/mergedist20 Copy only TIF from one merge category: cp /lustre/athorpe/ch4/gen_ime_geotif/output/FA17_Gas_Storage_Partial_1000ppmm_250fetch_5merge/ang2017*/mergedist5/*.tif /lustre/athorpe/ch4/gen_ime_geotif/output/FA17_Gas_Storage_Partial_1000ppmm_250fetch_5merge/GeoTIF_mergedist5 cp /lustre/bbue/ch4/ime_gtif_v7_2/ang2017*/mergedist5/*.tif /lustre/athorpe/ch4/gen_ime_geotif/output/FA17_Partial/mergedist5 Instructions for IME parameters: Hi Andrew, Done, I actually had this in the script already but the option wasn't exposed. To set the ppmm threshold, use the -p/--ppmmthr command line argument (default=500.0 ppmm). Also, you can specify a list of mergedist values via the -m/--mergedists argument and set the maximum fetch value via -f/--fetchmax if you'd like to vary those parameters as well. See usage string below for other options which may or may not be useful. Let me know if you run into any issues. _B bbue@gibson:srcfinder$ python compute_ime/compute_ime.py --help usage: compute_ime.py [-h] [-m MERGEDISTS [MERGEDISTS ...]] [-c] [-o OUTDIR] [-f FETCHMAX] [-p PPMMTHR] [--nodetfilt] [-i inputfile] [-l listfile] [--randomize] [--filter filter] xlsfile sheetname CMF IME Computation + Product Generation positional arguments: xlsfile Source master list spreadsheet sheetname Source master list spreadsheet sheet name optional arguments: -h, --help show this help message and exit -m MERGEDISTS [MERGEDISTS ...], --mergedists MERGEDISTS [MERGEDISTS ...] List of one or more distances (in meters) to merge neighboring blobs (default=[10, 20, 50]) -c, --clobber Clobber (overwrite) existing outputs -o OUTDIR, --outdir OUTDIR Save filtered detection image to OUTDIR -f FETCHMAX, --fetchmax FETCHMAX Maximum fetch value (default=unlimited) -p PPMMTHR, --ppmmthr PPMMTHR Minimum ppmm threshold (default=500.00) --nodetfilt Do not filter out small or weakly connected detections -i inputfile, --inputfile inputfile CMF image (assumed listed in spreadsheet) -l listfile, --listfile listfile List of CMF images to process (subset of images in provided spreadsheet) --randomize Randomize spreadsheet processing order (by source id) --filter filter Compute IME for spreadsheet rows matching filters of the form "spreadsheet_column:filter_string (e.g., "flightline:ang201605")" Hi Andrew, Sorry for the confusion; the [] in the usage string means the argument is optional, and assumes a default value if unspecified. So, to set the ppmm threshold to 350 you'd use "-p 350" and to use mergedists=10,25 you'd use "-m 10 25". So, for the params you specified below it'd be: /shared/anaconda2/bin/python2.7 /lustre/bbue/ch4/compute_ime/compute_ime.py lustre/athorpe/ch4/gen_ime_geotif/input/SP17_Master_Source_List_IME_20170822.xlsx "SP17 plumes 2" -o /lustre/athorpe/ch4/gen_ime_geotif/output/ime_gtif_1000ppmmm_20170817 -p 1000 -m 10 25 -f 200 Note that mergedists is the only param that can take multiple values (hence the multivalued spec in the usage string: [-m MERGEDISTS [MERGEDISTS ...]]), the other params -p/-f are floating point scalars. _B